文章摘要
姜君1 王鹏志2 刘利成2 吴伟立1 陈唯军1,2,3△.肠出血性大肠杆菌(O157:H7)的特异性荧光探针检测方法的建立[J].,2012,12(12):2201-2204
肠出血性大肠杆菌(O157:H7)的特异性荧光探针检测方法的建立
Establishment of Specific Fluorescent Quantitative PCR Assay forDetection of the Enterohemorrhagic Escherichia coli O157:H7*
  
DOI:
中文关键词: 大肠杆菌0157:H7  荧光定量PCR(real-time PCR)  Taqman 探针  rfbE
英文关键词: Escherichia coli O157  Real-time PCR  TaqMan probe  RfbE
基金项目:“十一五”国家科技支撑计划项目(2008BAK41B03);传染病专项(2008ZX10004-103)
作者单位
姜君1 王鹏志2 刘利成2 吴伟立1 陈唯军1,2,3△ 中国科学院北京基因组研究所基因组科学与信息重点实验室 
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中文摘要:
      目的:建立一种real-time PCR,快速准确检测肠出血性大肠杆菌O157:H7。方法:以肠出血性大肠杆菌0157:H7 rfbE 为待检 靶基因,设计一对引物和一条Taqman 探针,探针5' 端用FAM 基团标记,3' 端用TAMRA 标记。通过重组质粒的构建,建立并优 化了大肠杆菌0157:H7 的荧光定量PCR 检测方法。结果:在人工污染样本无需富集的情况下,检测的最低DNA 浓度是10 拷贝/ 反应(3CFU/mL);特异性检测实验中,0157 菌株检测结果均为rfbE 阳性,而非0157:H7 菌株检测结果均为阴性;重复性实验中, 批内、批间变异系数均小于3%。结论:实验结果显示此荧光定量PCR 方法特异性、灵敏度高,重复性好,可对分离的可疑大肠杆 菌0157:H7 菌株进行快速鉴定。
英文摘要:
      Objective: To develop a specific real-time PCR assay for the detection of Escherichia Coli O157:H7 in food. Methods: Probes and primers for a TaqMan quantitative PCR were designed and synthesized according to the conserved gene sequence rfbE of Enterohemorrhagic Escherichia coli (EHEC) O157: H7, available in GenBank. The rfbE probe was 5' end labeled with FAM and 3' end labeled with TAMRA. Then reaction parameters were optimized to develop a TaqMan-quantitative PCR assay. Results: The real-time PCR assay was applied to samples artificially contaminated by Escherichia Coli O157: H7,the detection limits of the sensitivity assays were 10 copies/reaction (3CFU/mL) of DNA. The qualitative consensus PCR assay indicated all Escherichia coil O157:H7 were found rfbE positive and did not detect DNA from non-O157:H7 isolates. In the duplicated experiment,coeficients of variation intra-assay and inter-assay over the dynamic range of the TaqMan probe assays were lower than 3%. Conclusion: This study shows that the real-time PCR is a repeatable, specific, sensitive and rapid method for the detection of EHEC O157: H7.
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